454高通量測序——研究土壤微生物的新手段（三）

注：已用454焦磷酸測序法發表的文章總結

1、Archaea predominate among ammonia-oxidizing prokaryotes in soils

—— (2006) Nature 442: 806-809——if 36.101

2、454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. 

——(2009) New Phytologist 184(2): 449-56.——if 6.516

3、Vertical distribution of fungal communities in tallgrass prairie soil.

——(2010) Mycologia 102(5): 1027-41.——if 6.2

4、A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. 

——(2009) ISME Journal 3(4): 442-53——if 6.153

5、Pyrosequencing enumerates and contrasts soil microbial diversity

 ——(2008) The ISME Journal 1: 283–290——if 6.153

6、Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica.

——(2010) ISME Journal 4(8): 989-1001.——if 6.152
7、Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. 

——(2010) FEMS Microbiology Letters 307(1): 80-6.——if 6.152

8、Soil bacterial and fungal communities across a pH gradient in an arable soil. 

——(2010) ISME Journal ePub:——if 4.42

9、Examining the global distribution of dominant archaeal populations in soil. 

—— (2010) ISME Journal ePub: ——if 4.42

10、Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome .

—— (2008) PloS One 3:——if 4.411

11、Characterization of trapped lignin-degrading microbes in tropical forest soil.

 ——(2011) PLoS One 6(4): e19306.——if 4.411

12、Impact of biochar application to soil on the root-associated bacterial community structure of fully developed greenhouse pepper plants. 

——(2011) Appl Environ Microbiol ePub:——if 3.8
13、Validation of heavy-water stable isotope probing for the characterization of rapidly responding soil bacteria. 

——(2011) Appl Eviron Microbiol ePub:——if 3.8
14、Identification of Nitrogen-Incorporating Bacteria in Petroleum-Contaminated Arctic Soils Using 15N DNA-SIP and Pyrosequencing. 

——(2011) Appl Environ Microbiol ePub: ——if 3.8

15、Pyrosequencing-based assessment of bacterial community structure along different management types in german forest and grassland soils.

——(2011) PLoS One 6(2): e17000.——if 3.8

16、Assessment of soil fungal communities using pyrosequencing. 

——(2010) Journal of Microbiology 48(3): 284-9.——if 3.8
17、Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach. 

——(2009) Environmental Microbiology ePub:——if 3.778

18、Assessment of bias associated with incomplete extraction of microbial DNA from soil. 

Feinstein LM, Sul WJ, Blackwood CB. (2009) Appl Environ Microbiol 75(16): 5428-33.——if 3.778

19、Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. 

——(2009) Applied Environmental Microbiology 75(2): 534-7——if 3.778
20、Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use.

——(2008) Soil Biology and Biochemistry 40: 2762-2770——if 3.242

21、Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments. 

——(2010) ISME Journal 4(6): 829-38.——if 2.039

22、Metagenomic comparison of direct and indirect soil DNA extraction approaches.

——(2011)Microbiol Methods ePub: ——if 2.018

23、Horizon-specific bacterial community composition of German grassland soils as revealed by pyrosequencing-based analysis of 16S rRNA genes.

—— (2010) Appl Environ Microbiol 76(20): 6751-9.

參考文獻

[1]  Li F D. Prosperous Areas of Current Soil Microbiology. Acta Pedologica Sinica , 1993 , 30(3) : 229～236.

[2]  Xu G H , Li Z G. Microbial Ecology. Nanjing : Southeast University Press , 1991.

[3]  Luo S M. Agroecology. Beijing : Chinese Agriculture Press , 2001. 72～96.

[4]  Fromin N , Hamelin J , Tarnawski S , et al . Statistical analysis ofdenaturing gel electrophoresis ( DGE) finger printing patterns [ J ] .Environ Microbiol , 2002 , 4 (11) :634 - 643

[5]  Ferris M J , Muyzer G, Ward D M. Denaturing gradient gel electrophoresis profiles of 16S rRNA defined populations inhabiting a hotspring microbial mat community[J ] . Appl Environ Microbiol , 1996 ,62 :340 - 346

[6]  Zhang T, Fang H H P. Biotechnol Lett, 2000, 22: 399-405．

[7]  Wagner M, Arnann R, Lemmer H, et al. Appl Environ Microbiol, 1993, 59: 1520~1525.

[8]  Andreas F, Arthur W, Robert L, et al. FEMS Microbiol Ecol, 1999,30:137~145.

[9]  Pyrosequencing enumerates and contrasts soil microbial diversity. Luiz FW Roesch, Roberta R Fulthorpe, Alberto Riva, George Casella, Alison KM Hadwin, Angela D Kent, Samira H Daroub, Flavio AO Camargo, William G Farmerie and Eric W Triplett (2008) The ISME Journal 1: 283–290

[10]  Assessment of soil fungal communities using pyrosequencing.  Lim YW, Kim BK, Kim C, Jung HS, Kim BS, Lee JH, Chun J. (2010) Journal of Microbiology 48(3): 284-9.

[11]  Archaea predominate among ammonia-oxidizing prokaryotes in soils  S. Leininger, T. Urich, M. Schloter, L. Schwark, J. Qi, G. W. Nicol, J. I. Prosser, S. C. Schuster, C. Schleper (2006) Nature 442: 806-809

[12]  Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome   Urich T, Lanzén A, Qi J, Huson DH, Schleper C, Schuster SC. (2008) PloS One 3:

[13]  A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.  Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N. (2009) ISME Journal 3(4): 442-53

[14]   Validation of heavy-water stable isotope probing for the characterization of rapidly responding soil bacteria.  Aanderud ZT, Lennon JT. (2011) Appl Eviron Microbiol